Package: penAFT 0.3.2

Aaron J. Molstad

penAFT: Fit the Semiparameteric Accelerated Failure Time Model with Elastic Net and Sparse Group Lasso Penalties

The semiparametric accelerated failure time (AFT) model is an attractive alternative to the Cox proportional hazards model. This package provides a suite of functions for fitting one popular rank-based estimator of the semiparametric AFT model, the regularized Gehan estimator. Specifically, we provide functions for cross-validation, prediction, coefficient extraction, and visualizing both trace plots and cross-validation curves. For further details, please see Suder, P. M. and Molstad, A. J., (2022) Scalable algorithms for semiparametric accelerated failure time models in high dimensions, Statistics in Medicine <doi:10.1002/sim.9264>.

Authors:Aaron J. Molstad [aut, cre], Piotr M. Suder [aut]

penAFT_0.3.2.tar.gz
penAFT_0.3.2.zip(r-4.7)penAFT_0.3.2.zip(r-4.6)penAFT_0.3.2.zip(r-4.5)
penAFT_0.3.2.tgz(r-4.6-x86_64)penAFT_0.3.2.tgz(r-4.6-arm64)penAFT_0.3.2.tgz(r-4.5-x86_64)penAFT_0.3.2.tgz(r-4.5-arm64)
penAFT_0.3.2.tar.gz(r-4.7-arm64)penAFT_0.3.2.tar.gz(r-4.7-x86_64)penAFT_0.3.2.tar.gz(r-4.6-arm64)penAFT_0.3.2.tar.gz(r-4.6-x86_64)
penAFT_0.3.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
penAFT/json (API)

# Install 'penAFT' in R:
install.packages('penAFT', repos = c('https://ajmolstad.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ajmolstad/penaft/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

survival-analysisvariable-selectionopenblascpp

3.48 score 1 stars 1 packages 9 scripts 280 downloads 7 exports 22 dependencies

Last updated from:edf51c94f6. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK152
linux-devel-x86_64OK152
source / vignettesOK171
linux-release-arm64OK157
linux-release-x86_64OK145
macos-release-arm64OK150
macos-release-x86_64OK347
macos-oldrel-arm64OK195
macos-oldrel-x86_64OK377
windows-develOK197
windows-releaseOK142
windows-oldrelOK142
wasm-releaseOK113

Exports:genSurvDatapenAFTpenAFT.coefpenAFT.cvpenAFT.plotpenAFT.predictpenAFT.trace

Dependencies:clicpp11farverggplot2gluegtableirlbaisobandlabelinglatticelifecycleMatrixR6RColorBrewerRcppRcppArmadillorlangS7scalesvctrsviridisLitewithr