Package: penAFT 0.3.2

Aaron J. Molstad

penAFT: Fit the Semiparameteric Accelerated Failure Time Model with Elastic Net and Sparse Group Lasso Penalties

The semiparametric accelerated failure time (AFT) model is an attractive alternative to the Cox proportional hazards model. This package provides a suite of functions for fitting one popular rank-based estimator of the semiparametric AFT model, the regularized Gehan estimator. Specifically, we provide functions for cross-validation, prediction, coefficient extraction, and visualizing both trace plots and cross-validation curves. For further details, please see Suder, P. M. and Molstad, A. J., (2022) Scalable algorithms for semiparametric accelerated failure time models in high dimensions, Statistics in Medicine <doi:10.1002/sim.9264>.

Authors:Aaron J. Molstad [aut, cre], Piotr M. Suder [aut]

penAFT_0.3.2.tar.gz
penAFT_0.3.2.zip(r-4.7-x86_64)penAFT_0.3.2.zip(r-4.7-arm64)penAFT_0.3.2.zip(r-4.6-x86_64)penAFT_0.3.2.zip(r-4.6-arm64)penAFT_0.3.2.zip(r-4.5-x86_64)
penAFT_0.3.2.tgz(r-4.6-x86_64)penAFT_0.3.2.tgz(r-4.6-arm64)penAFT_0.3.2.tgz(r-4.5-x86_64)penAFT_0.3.2.tgz(r-4.5-arm64)
penAFT_0.3.2.tar.gz(r-4.7-arm64)penAFT_0.3.2.tar.gz(r-4.7-x86_64)penAFT_0.3.2.tar.gz(r-4.6-arm64)penAFT_0.3.2.tar.gz(r-4.6-x86_64)
penAFT_0.3.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
penAFT/json (API)

# Install 'penAFT' in R:
install.packages('penAFT', repos = c('https://ajmolstad.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ajmolstad/penaft/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

survival-analysisvariable-selectionopenblascpp

3.48 score 1 stars 1 packages 9 scripts 402 downloads 7 exports 22 dependencies

Last updated from:edf51c94f6. Checks:15 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK141
linux-devel-x86_64OK155
source / vignettesOK160
linux-release-arm64OK133
linux-release-x86_64OK150
macos-release-arm64OK189
macos-release-x86_64OK639
macos-oldrel-arm64OK222
macos-oldrel-x86_64OK253
windows-devel-arm64OK371
windows-devel-x86_64OK178
windows-release-arm64OK375
windows-release-x86_64OK127
windows-oldrel-x86_64OK124
wasm-releaseOK98

Exports:genSurvDatapenAFTpenAFT.coefpenAFT.cvpenAFT.plotpenAFT.predictpenAFT.trace

Dependencies:clicpp11farverggplot2gluegtableirlbaisobandlabelinglatticelifecycleMatrixR6RColorBrewerRcppRcppArmadillorlangS7scalesvctrsviridisLitewithr